4FDB Three-dimensional structure of the protein prib from ralstonia solanacearum at the resolution 1.8a. northeast structural genomics consortium target rsr213c date 2012-05-27
authors Kuzin, A., Neely, H., Seetharaman, J., Wang, H., Sahdev, S., Foote, E.L., Xiao, R., Liu, J., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand ACY, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (4fdb.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4FDB
  • CSU: Contacts of Structural Units for 4FDB
  • Structure Factors (119 Kb)
  • Retrieve 4FDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FDB from S2C, [Save to disk]
  • Re-refined 4fdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FDB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FDB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fdb] [4fdb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FDB
  • Community annotation for 4FDB at PDBWiki (http://pdbwiki.org)

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