4FDC Crystal structure of the E493V mutant of human apoptosis inducing factor (AIF) date 2012-05-27
authors Sevrioukova, I.F.
compound source
symmetry
R_factor
R_Free 0.29678
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceCowchock syndrome is associated with a mutation in apoptosis-inducing factor., Rinaldi C, Grunseich C, Sevrioukova IF, Schindler A, Horkayne-Szakaly I, Lamperti C, Landoure G, Kennerson ML, Burnett BG, Bonnemann C, Biesecker LG, Ghezzi D, Zeviani M, Fischbeck KH, Am J Hum Genet. 2012 Dec 7;91(6):1095-102. doi: 10.1016/j.ajhg.2012.10.008. PMID:23217327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4fdc.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4FDC
  • CSU: Contacts of Structural Units for 4FDC
  • Structure Factors (315 Kb)
  • Retrieve 4FDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FDC from S2C, [Save to disk]
  • Re-refined 4fdc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FDC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FDC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fdc_B] [4fdc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FDC: [AIF_C ] by SMART
    • Other resources with information on 4FDC
  • Community annotation for 4FDC at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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