4FDD Transport Protein date May 28, 2012
title Crystal Structure Of Kap Beta2-Py-Nls
authors Z.C.Zhang, Y.M.Chook
compound source
Molecule: Transportin-1
Chain: A
Synonym: Importin Beta-2, Karyopherin Beta-2, M9 Region Int Protein, Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kpnb2, Mip1, Tnpo1, Transportin-1, Trn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgextev

Molecule: Rna-Binding Protein Fus
Chain: B
Synonym: 75 Kda Dna-Pairing Protein, Oncogene Fus, Oncogene Pomp75, Translocated In Liposarcoma Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fus, Tls
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgextev
symmetry Space Group: P 21 21 2
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.720 157.255 67.543 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and energetic basis of ALS-causing mutations in the atypical proline-tyrosine nuclear localization signal of the Fused in Sarcoma protein (FUS)., Zhang ZC, Chook YM, Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12017-21. doi:, 10.1073/pnas.1207247109. Epub 2012 Jul 9. PMID:22778397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (4fdd.pdb1.gz) 286 Kb
  • CSU: Contacts of Structural Units for 4FDD
  • Structure Factors (1107 Kb)
  • Retrieve 4FDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FDD from S2C, [Save to disk]
  • Re-refined 4fdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FDD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FDD, from MSDmotif at EBI
  • Fold representative 4fdd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fdd_A] [4fdd_B] [4fdd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FDD: [IBN_N ] by SMART
  • Other resources with information on 4FDD
  • Community annotation for 4FDD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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