4FDD Transport Protein date May 28, 2012
title Crystal Structure Of Kap Beta2-Py-Nls
authors Z.C.Zhang, Y.M.Chook
compound source
Molecule: Transportin-1
Chain: A
Synonym: Importin Beta-2, Karyopherin Beta-2, M9 Region Int Protein, Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kpnb2, Mip1, Tnpo1, Transportin-1, Trn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgextev

Molecule: Rna-Binding Protein Fus
Chain: B
Synonym: 75 Kda Dna-Pairing Protein, Oncogene Fus, Oncogene Pomp75, Translocated In Liposarcoma Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fus, Tls
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgextev
symmetry Space Group: P 21 21 2
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.720 157.255 67.543 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and energetic basis of ALS-causing mutations in the atypical proline-tyrosine nuclear localization signal of the Fused in Sarcoma protein (FUS)., Zhang ZC, Chook YM, Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12017-21. doi:, 10.1073/pnas.1207247109. Epub 2012 Jul 9. PMID:22778397
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (4fdd.pdb1.gz) 286 Kb
  • CSU: Contacts of Structural Units for 4FDD
  • Structure Factors (1107 Kb)
  • Retrieve 4FDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FDD from S2C, [Save to disk]
  • Re-refined 4fdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FDD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FDD, from MSDmotif at EBI
  • Fold representative 4fdd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fdd_A] [4fdd_B] [4fdd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 4FDD with the sequences similar proteins can be viewed for 4FDD's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4FDD
  • Community annotation for 4FDD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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