4FDJ Hydrolase date May 28, 2012
title The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex W
authors Y.Rivera-Colon, S.C.Garman
compound source
Molecule: N-Acetylgalactosamine-6-Sulfatase
Chain: A, B
Fragment: Unp Residues 27-522
Synonym: Galns, Chondroitinsulfatase, Chondroitinase, Galac Sulfate Sulfatase, N-Acetylgalactosamine-6-Sulfate Sulfatas Galnac6s Sulfatase;
Ec: 3.1.6.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Galns
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Hi-Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pibv5-His-Topo Ta
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.706 155.835 61.801 90.00 113.43 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand CA, DDZ, NAG, NGA enzyme Hydrolase E.C.3.1.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Structure of Human GALNS Reveals the Molecular Basis for Mucopolysaccharidosis IV A., Rivera-Colon Y, Schutsky EK, Kita AZ, Garman SC, J Mol Biol. 2012 Aug 29. PMID:22940367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (4fdj.pdb1.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 4FDJ
  • CSU: Contacts of Structural Units for 4FDJ
  • Structure Factors (201 Kb)
  • Retrieve 4FDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FDJ from S2C, [Save to disk]
  • Re-refined 4fdj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FDJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FDJ, from MSDmotif at EBI
  • Fold representative 4fdj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fdj_A] [4fdj_B] [4fdj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FDJ
  • Community annotation for 4FDJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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