4FFX Lyase date Jun 01, 2012
title Structural And Biochemical Characterization Of Human Adenylo Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutat
authors M.K.Deaton, S.P.Ray, G.C.Capodagli, L.A.F.Calkins, L.Sawle, K.Gho D.Patterson, S.D.Pegan
compound source
Molecule: Adenylosuccinate Lyase
Chain: A, B, C, D
Synonym: Asl, Adenylosuccinase, Asase
Ec: 4.3.2.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adsl, Amps
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-14b
symmetry Space Group: P 21 21 21
R_factor 0.243 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.919 105.153 214.928 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Lyase E.C.4.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • N6-(1,2-dicarboxyethyl)AMP A...


  • Primary referenceStructural and Biochemical Characterization of Human Adenylosuccinate Lyase (ADSL) and the R303C ADSL Deficiency Associated Mutation., Ray SP, Deaton MK, Capodagli GC, Calkins LA, Sawle L, Ghosh K, Patterson D, Pegan SD, Biochemistry. 2012 Jul 19. PMID:22812634
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (4ffx.pdb1.gz) 292 Kb
  • CSU: Contacts of Structural Units for 4FFX
  • Structure Factors (690 Kb)
  • Retrieve 4FFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FFX from S2C, [Save to disk]
  • Re-refined 4ffx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FFX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FFX, from MSDmotif at EBI
  • Fold representative 4ffx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ffx_C] [4ffx] [4ffx_A] [4ffx_D] [4ffx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 4FFX with the sequences similar proteins can be viewed for 4FFX's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4FFX
  • Community annotation for 4FFX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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