4FG9 Transferase date Jun 04, 2012
title Crystal Structure Of Human Calciumcalmodulin-Dependent Prot I 1-320 In Complex With Atp
authors M.Zha, C.Zhong, Y.Ou, J.Wang, L.Han, J.Ding
compound source
Molecule: Calciumcalmodulin-Dependent Protein Kinase Type
Chain: A, B
Fragment: Residues 1-320
Synonym: Cam Kinase I, Cam-Ki, Cam Kinase I Alpha, Camki-Al
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Camk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: P 63
R_factor 0.209 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.097 83.097 153.004 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ATP enzyme Transferase E.C.2.7.11.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of human CaMKIalpha reveal insights into the regulation mechanism of CaMKI., Zha M, Zhong C, Ou Y, Han L, Wang J, Ding J, PLoS One. 2012;7(9):e44828. doi: 10.1371/journal.pone.0044828. Epub 2012 Sep 20. PMID:23028635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (4fg9.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (4fg9.pdb2.gz) 97 Kb
  • Biological Unit Coordinates (4fg9.pdb3.gz) 564 Kb
  • LPC: Ligand-Protein Contacts for 4FG9
  • CSU: Contacts of Structural Units for 4FG9
  • Structure Factors (460 Kb)
  • Retrieve 4FG9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FG9 from S2C, [Save to disk]
  • Re-refined 4fg9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FG9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FG9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FG9, from MSDmotif at EBI
  • Fold representative 4fg9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fg9_B] [4fg9] [4fg9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FG9: [S_TKc ] by SMART
  • Alignments of the sequence of 4FG9 with the sequences similar proteins can be viewed for 4FG9's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4FG9
  • Community annotation for 4FG9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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