4FGB Transferase date Jun 04, 2012
title Crystal Structure Of Human Calciumcalmodulin-Dependent Prot I Apo Form
authors M.Zha, C.Zhong, Y.Ou, J.Wang, L.Han, J.Ding
compound source
Molecule: Calciumcalmodulin-Dependent Protein Kinase Type
Chain: A
Fragment: Residues 1-320
Synonym: Cam Kinase I, Cam-Ki, Cam Kinase I Alpha, Camki-Al
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Camk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: C 1 2 1
R_factor 0.248 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.046 67.700 56.138 90.00 99.75 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Transferase E.C.2.7.11.17 BRENDA
Primary referenceCrystal structures of human CaMKIalpha reveal insights into the regulation mechanism of CaMKI., Zha M, Zhong C, Ou Y, Han L, Wang J, Ding J, PLoS One. 2012;7(9):e44828. doi: 10.1371/journal.pone.0044828. Epub 2012 Sep 20. PMID:23028635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4fgb.pdb1.gz) 89 Kb
  • CSU: Contacts of Structural Units for 4FGB
  • Structure Factors (231 Kb)
  • Retrieve 4FGB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FGB from S2C, [Save to disk]
  • Re-refined 4fgb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FGB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FGB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FGB, from MSDmotif at EBI
  • Fold representative 4fgb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fgb_A] [4fgb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FGB: [S_TKc ] by SMART
  • Other resources with information on 4FGB
  • Community annotation for 4FGB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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