4FK2 RB69 DNA polymerase ternary complex with dTTP/dG date 2012-06-12
authors Xia, S., Wang, J., Konigsberg, W.H.
compound source
symmetry
R_factor
R_Free 0.22465
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.98
ligand CA, DOC, TTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceDNA Mismatch Synthesis Complexes Provide Insights into Base Selectivity of a B Family DNA Polymerase., Xia S, Wang J, Konigsberg WH, J Am Chem Soc. 2012 Dec 6. PMID:23214497
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (4fk2.pdb1.gz) 331 Kb
  • LPC: Ligand-Protein Contacts for 4FK2
  • CSU: Contacts of Structural Units for 4FK2
  • Structure Factors (1180 Kb)
  • Retrieve 4FK2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FK2 from S2C, [Save to disk]
  • Re-refined 4fk2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FK2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FK2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FK2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fk2_P] [4fk2_A] [4fk2_T] [4fk2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FK2: [POLBc ] by SMART
  • Other resources with information on 4FK2
  • Community annotation for 4FK2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science