4FL6 Transcription date Jun 14, 2012
title Crystal Structure Of The Complex Of The 3-Mbt Repeat Domain And Unc1215
authors N.Zhong, W.Tempel, M.Ravichandran, A.Dong, L.A.Ingerman, S.Graslu S.V.Frye, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, Str Genomics Consortium (Sgc)
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein 3
Chain: A, B
Synonym: H-L(3)Mbt-Like Protein 3, L(3)Mbt-Like Protein 3,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1798, L3mbtl3, Mbt1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pnic-Ch
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.259
length a length b length c angle alpha angle beta angle gamma
228.026 54.372 65.549 90.00 97.11 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand UNX, UWN enzyme
A, B

Primary referenceDiscovery of a chemical probe for the L3MBTL3 methyllysine reader domain., James LI, Barsyte-Lovejoy D, Zhong N, Krichevsky L, Korboukh VK, Herold JM, MacNevin CJ, Norris JL, Sagum CA, Tempel W, Marcon E, Guo H, Gao C, Huang XP, Duan S, Emili A, Greenblatt JF, Kireev DB, Jin J, Janzen WP, Brown PJ, Bedford MT, Arrowsmith CH, Frye SV, Nat Chem Biol. 2013 Mar;9(3):184-91. doi: 10.1038/nchembio.1157. Epub 2013 Jan 6. PMID:23292653
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (4fl6.pdb1.gz) 205 Kb
  • LPC: Ligand-Protein Contacts for 4FL6
  • CSU: Contacts of Structural Units for 4FL6
  • Structure Factors (1283 Kb)
  • Retrieve 4FL6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FL6 from S2C, [Save to disk]
  • Re-refined 4fl6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FL6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FL6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FL6, from MSDmotif at EBI
  • Fold representative 4fl6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fl6_A] [4fl6_B] [4fl6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FL6: [MBT ] by SMART
  • Other resources with information on 4FL6
  • Community annotation for 4FL6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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