4FLA Transcription date Jun 14, 2012
title Crystal Structure Of Human Rprd1b, Carboxy-Terminal Domain
authors Z.Ni, C.Xu, W.Tempel, M.El Bakkouri, P.Loppnau, X.Guo, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, J.F.Greenblatt, Structural Consortium (Sgc)
compound source
Molecule: Regulation Of Nuclear Pre-Mrna Domain-Containing 1b;
Chain: A, B, C, D
Fragment: Unp Residues 172-305
Synonym: Cell Cycle-Related And Expression-Elevated Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rprd1b, C20orf77, Crept
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet28 Mhl
symmetry Space Group: P 4 21 2
R_factor 0.232 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
100.221 100.221 142.887 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand UNX enzyme
Primary referenceRPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation., Ni Z, Xu C, Guo X, Hunter GO, Kuznetsova OV, Tempel W, Marcon E, Zhong G, Guo H, Kuo WH, Li J, Young P, Olsen JB, Wan C, Loppnau P, El Bakkouri M, Senisterra GA, He H, Huang H, Sidhu SS, Emili A, Murphy S, Mosley AL, Arrowsmith CH, Min J, Greenblatt JF, Nat Struct Mol Biol. 2014 Jul 6. doi: 10.1038/nsmb.2853. PMID:24997600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (4fla.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (4fla.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4FLA
  • CSU: Contacts of Structural Units for 4FLA
  • Structure Factors (6423 Kb)
  • Retrieve 4FLA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FLA from S2C, [Save to disk]
  • Re-refined 4fla structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FLA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FLA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FLA, from MSDmotif at EBI
  • Fold representative 4fla from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fla_A] [4fla_D] [4fla] [4fla_C] [4fla_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FLA
  • Community annotation for 4FLA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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