4FLC Lyase date Jun 14, 2012
title Structural And Biochemical Characterization Of Human Adenylo Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutat
authors M.K.Deaton, S.P.Ray, G.C.Capodagli, L.A.F.Calkins, L.Sawle, K.Gho D.Patterson, S.D.Pegan
compound source
Molecule: Adenylosuccinate Lyase
Chain: A, B, C, D
Synonym: Asl, Adenylosuccinase, Asase
Ec: 4.3.2.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adsl, Amps
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-14b
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.799 105.562 217.221 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Lyase E.C.4.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • N6-(1,2-dicarboxyethyl)AMP A...


  • Primary referenceStructural and Biochemical Characterization of Human Adenylosuccinate Lyase (ADSL) and the R303C ADSL Deficiency Associated Mutation., Ray SP, Deaton MK, Capodagli GC, Calkins LA, Sawle L, Ghosh K, Patterson D, Pegan SD, Biochemistry. 2012 Jul 19. PMID:22812634
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]
  • Biological Unit Coordinates (4flc.pdb1.gz) 438 Kb
  • CSU: Contacts of Structural Units for 4FLC
  • Structure Factors (888 Kb)
  • Retrieve 4FLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FLC from S2C, [Save to disk]
  • Re-refined 4flc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FLC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FLC, from MSDmotif at EBI
  • Fold representative 4flc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4flc_A] [4flc_C] [4flc_B] [4flc_D] [4flc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FLC: [ADSL_C ] by SMART
  • Other resources with information on 4FLC
  • Community annotation for 4FLC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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