4FLP Transcription Regulator Inhibitor date Jun 15, 2012
title Crystal Structure Of The First Bromodomain Of Human Brdt In With The Inhibitor Jq1
authors P.Filippakopoulos, S.Picaud, J.Qi, I.Felletar, P.Canning, J.Muniz Delft, C.Bountra, C.H.Arrowsmith, A.Edwards, J.Bradner, S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain Testis-Specific Protein
Chain: A, B
Fragment: First Bromodomain (Unp Residues 21-137)
Synonym: Cancertestis Antigen 9, Ct9, Ring3-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brdt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 2 21
R_factor 0.211 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
37.400 57.420 128.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand JQ1, K enzyme
Primary referenceSmall-Molecule Inhibition of BRDT for Male Contraception., Matzuk MM, McKeown MR, Filippakopoulos P, Li Q, Ma L, Agno JE, Lemieux ME, Picaud S, Yu RN, Qi J, Knapp S, Bradner JE, Cell. 2012 Aug 17;150(4):673-684. PMID:22901802
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4flp.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4flp.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 4FLP
  • CSU: Contacts of Structural Units for 4FLP
  • Structure Factors (494 Kb)
  • Retrieve 4FLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FLP from S2C, [Save to disk]
  • Re-refined 4flp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FLP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FLP, from MSDmotif at EBI
  • Fold representative 4flp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4flp] [4flp_B] [4flp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FLP: [BROMO ] by SMART
  • Other resources with information on 4FLP
  • Community annotation for 4FLP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science