4FLX Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode date
authors Gouge, J., Delarue, M.
compound source
symmetry
R_factor
R_Free 0.2112
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand GOL, MES, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...


  • Primary referenceMolecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase., Gouge J, Ralec C, Henneke G, Delarue M, J Mol Biol. 2012 Oct 26;423(3):315-36. doi: 10.1016/j.jmb.2012.07.025. Epub 2012 , Aug 16. PMID:22902479
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (4flx.pdb1.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 4FLX
  • CSU: Contacts of Structural Units for 4FLX
  • Structure Factors (835 Kb)
  • Retrieve 4FLX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FLX from S2C, [Save to disk]
  • Re-refined 4flx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FLX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FLX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FLX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4flx_P] [4flx_T] [4flx] [4flx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FLX: [POLBc ] by SMART
  • Other resources with information on 4FLX
  • Community annotation for 4FLX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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