4FM5 X-ray structure of des-methylflurbiprofen bound to murine COX-2 date 2012-06-15
authors Xu, S., Banerjee, S., Windsor, M.A., Marnett, L.J.
compound source
symmetry
R_factor
R_Free 0.28974
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.81
ligand BOG, DF0, HEM, NAG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSubstrate-Selective Inhibition of Cyclooxygenase-2: Development and Evaluation of Achiral Profen Probes., Windsor MA, Hermanson DJ, Kingsley PJ, Xu S, Crews BC, Ho W, Keenan CM, Banerjee S, Sharkey KA, Marnett LJ, ACS Med Chem Lett. 2012 Sep 13;3(9):759-763. Epub 2012 Aug 15. PMID:22984634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (376 Kb) [Save to disk]
  • Biological Unit Coordinates (4fm5.pdb1.gz) 185 Kb
  • Biological Unit Coordinates (4fm5.pdb2.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 4FM5
  • CSU: Contacts of Structural Units for 4FM5
  • Structure Factors (1152 Kb)
  • Retrieve 4FM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FM5 from S2C, [Save to disk]
  • Re-refined 4fm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FM5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FM5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fm5_A] [4fm5_C] [4fm5_B] [4fm5_D] [4fm5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FM5: [EGF ] by SMART
    • Other resources with information on 4FM5
  • Community annotation for 4FM5 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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