4FO9 Ligase date Jun 20, 2012
title Crystal Structure Of The E3 Sumo Ligase Pias2
authors A.Dong, J.Hu, E.Dobrovetsky, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Y.Tong, Structural Genomics Consortium (Sgc)
compound source
Molecule: E3 Sumo-Protein Ligase Pias2
Chain: A
Fragment: Unp Residues 147-488
Synonym: Androgen Receptor-Interacting Protein 3, Arip3, Da Interacting Protein, Dip, Msx-Interacting Zinc Finger Prote Pias-Ny Protein, Protein Inhibitor Of Activated Stat X, Pro Inhibitor Of Activated Stat2;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pias2, Piasx
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free 0.257
length a length b length c angle alpha angle beta angle gamma
90.288 170.140 57.507 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand UNX, ZN enzyme Ligase E.C.6.3.2 BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (4fo9.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4FO9
  • CSU: Contacts of Structural Units for 4FO9
  • Structure Factors (1277 Kb)
  • Retrieve 4FO9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FO9 from S2C, [Save to disk]
  • Re-refined 4fo9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FO9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FO9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FO9, from MSDmotif at EBI
  • Fold representative 4fo9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fo9] [4fo9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FO9
  • Community annotation for 4FO9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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