4FR4 Crystal structure of human serine/threonine-protein kinase 32A (YANK1) date 2012-06-26
authors Chaikuad, A., Elkins, J.M., Krojer, T., Mahajan, P., Goubin, S., Szklarz, M., Tumber, A., Wang, J., Savitsky, P., Shrestha, B., Daga, N., Picaud, S., Fedorov, O., Allerston, C.K., Latwiel, S.V.A., Vollmar, M., Canning, P., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.24449
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.29
ligand EDO, STU enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (737 Kb) [Save to disk]
  • Biological Unit Coordinates (4fr4.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (4fr4.pdb2.gz) 126 Kb
  • Biological Unit Coordinates (4fr4.pdb3.gz) 125 Kb
  • Biological Unit Coordinates (4fr4.pdb4.gz) 124 Kb
  • Biological Unit Coordinates (4fr4.pdb5.gz) 125 Kb
  • Biological Unit Coordinates (4fr4.pdb6.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 4FR4
  • CSU: Contacts of Structural Units for 4FR4
  • Structure Factors (5328 Kb)
  • Retrieve 4FR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FR4 from S2C, [Save to disk]
  • Re-refined 4fr4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FR4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FR4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fr4_F] [4fr4] [4fr4_E] [4fr4_D] [4fr4_A] [4fr4_C] [4fr4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FR4: [S_TKc ] by SMART
    • Other resources with information on 4FR4
  • Community annotation for 4FR4 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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