4FRU Crystal structure of horse wild-type cyclophilin B date
authors Boudko, S.P., Ishikawa, Y., Bachinger, H.P.
compound source
symmetry
R_factor
R_Free 0.1391
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.10
ligand ME2, PEG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse., Boudko SP, Ishikawa Y, Lerch TF, Nix J, Chapman MS, Bachinger HP, BMC Res Notes. 2012 Nov 8;5:626. doi: 10.1186/1756-0500-5-626. PMID:23137129
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4fru.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4FRU
  • CSU: Contacts of Structural Units for 4FRU
  • Structure Factors (505 Kb)
  • Retrieve 4FRU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FRU from S2C, [Save to disk]
  • Re-refined 4fru structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FRU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FRU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FRU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fru_A] [4fru]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FRU
  • Community annotation for 4FRU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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