4FS5 Dna date Jun 26, 2012
title Crystal Structure Of The Z-Dna Hexamer Cgcgcg At 500 Mm Mgcl
authors T.Chatake, T.Sunami
compound source
Molecule: Dna (5'-D(Cpgpcpgpcpg)-3')
Chain: A, B
Engineered: Yes
Synthetic: Yes
Other_details: Chemical Synthesis
symmetry Space Group: P 32
R_factor 0.211 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
18.593 18.593 72.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand CL, MG enzyme
Primary referenceDirect interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl and CaCl, Chatake T, Sunami T, J Inorg Biochem. 2013 Mar 19;124C:15-25. doi: 10.1016/j.jinorgbio.2013.03.004. PMID:23578858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (4fs5.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 4FS5
  • CSU: Contacts of Structural Units for 4FS5
  • Structure Factors (138 Kb)
  • Retrieve 4FS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FS5 from S2C, [Save to disk]
  • Re-refined 4fs5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FS5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FS5, from MSDmotif at EBI
  • Fold representative 4fs5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fs5] [4fs5_B] [4fs5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FS5
  • Community annotation for 4FS5 at PDBWiki (http://pdbwiki.org)

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