4FTB Virus date Jun 27, 2012
title Crystal Structure Of The Authentic Flock House Virus Particl
authors J.A.Speir, Z.Chen, V.S.Reddy, J.E.Johnson
compound source
Molecule: Capsid Protein Beta
Chain: A, B, C
Synonym: Coat Protein Beta
Ec: 3.4.23.44
Engineered: Yes
Organism_scientific: Flock House Virus
Organism_common: Fhv
Organism_taxid: 12287
Gene: Alpha, Coat Protein Alpha
Expression_system: Drosophila Melanogaster
Expression_system_cell_line: Dl-1

Molecule: Capsid Protein Gamma
Chain: D, E, F
Synonym: Peptide Gamma, Coat Protein Gamma
Engineered: Yes

Organism_scientific: Flock House Virus
Organism_common: Fhv
Organism_taxid: 12287
Gene: Alpha, Coat Protein Alpha
Expression_system: Drosophila Melanogaster
Expression_system_cell_line: Dl-1

Molecule: Flock House Virus Genomic Rna
Chain: R

Organism_scientific: Flock House Virus
Organism_taxid: 12287
Other_details: Genomic Rna Produced During Virus Replicatio Cells.
symmetry Space Group: H 3
R_factor 0.240 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
327.660 327.660 774.490 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand CA, CL, EPE enzyme Hydrolase E.C.3.4.23.44 BRENDA
note 4FTB supersedes 2Z2Q
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (4ftb.pdb1.gz) 9915 Kb
  • LPC: Ligand-Protein Contacts for 4FTB
  • CSU: Contacts of Structural Units for 4FTB
  • Structure Factors (6757 Kb)
  • Retrieve 4FTB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FTB from S2C, [Save to disk]
  • Re-refined 4ftb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FTB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FTB
  • VIPERdb: visual, structural and computational analysis of 4FTB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FTB, from MSDmotif at EBI
  • Fold representative 4ftb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ftb_R] [4ftb_D] [4ftb_F] [4ftb_B] [4ftb_E] [4ftb] [4ftb_A] [4ftb_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FTB
  • Community annotation for 4FTB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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