4FU3 Transcription date Jun 28, 2012
title Cid Of Human Rprd1b
authors Z.Ni, C.Xu, W.Tempel, M.El Bakkouri, P.Loppnau, X.Guo, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, J.F.Greenblatt, Structural Consortium (Sgc)
compound source
Molecule: Regulation Of Nuclear Pre-Mrna Domain-Containing 1b;
Chain: A, B
Fragment: Unp Residues 2-235
Synonym: Cell Cycle-Related And Expression-Elevated Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rprd1b, C20orf77, Crept
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15 Mhl
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.752 79.784 108.666 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, MSE, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (4fu3.pdb1.gz) 172 Kb
  • Biological Unit Coordinates (4fu3.pdb2.gz) 85 Kb
  • Biological Unit Coordinates (4fu3.pdb3.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4FU3
  • CSU: Contacts of Structural Units for 4FU3
  • Structure Factors (1582 Kb)
  • Retrieve 4FU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FU3 from S2C, [Save to disk]
  • Re-refined 4fu3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FU3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FU3, from MSDmotif at EBI
  • Fold representative 4fu3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fu3] [4fu3_A] [4fu3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FU3: [RPR ] by SMART
  • Other resources with information on 4FU3
  • Community annotation for 4FU3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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