4FWE Native structure of LSD2 /AOF1/KDM1b in spacegroup of C2221 at 2.13A date 2012-07-01
authors Zhang, Q., Chen, Z.
compound source
symmetry
R_factor
R_Free 0.24556
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.13
ligand FAD, FLC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-function analysis reveals a novel mechanism for regulation of histone demethylase LSD2/AOF1/KDM1b., Zhang Q, Qi S, Xu M, Yu L, Tao Y, Deng Z, Wu W, Li J, Chen Z, Wong J, Cell Res. 2012 Dec 25. doi: 10.1038/cr.2012.177. PMID:23266887
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (4fwe.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (4fwe.pdb2.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 4FWE
  • CSU: Contacts of Structural Units for 4FWE
  • Structure Factors (361 Kb)
  • Retrieve 4FWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FWE from S2C, [Save to disk]
  • Re-refined 4fwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FWE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FWE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fwe] [4fwe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FWE
  • Community annotation for 4FWE at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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