4FXV Rna Binding Protein, Transcription date Jul 03, 2012
title Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From Ho At 1.90 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology, Partnership For T-Cell Biology (Tcell)
compound source
Molecule: Elav-Like Protein 1
Chain: A, B, C, D
Fragment: Rrm 1 Domain Residues 20-99
Synonym: Hu-Antigen R, Hur
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bc003376, Elavl1, Hur
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pb1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 61 2 2
R_factor 0.202 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.436 73.436 272.957 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (4fxv.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4fxv.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (4fxv.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (4fxv.pdb4.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 4FXV
  • CSU: Contacts of Structural Units for 4FXV
  • Structure Factors (4407 Kb)
  • Retrieve 4FXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FXV from S2C, [Save to disk]
  • Re-refined 4fxv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FXV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FXV, from MSDmotif at EBI
  • Fold representative 4fxv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fxv_C] [4fxv] [4fxv_A] [4fxv_B] [4fxv_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FXV: [RRM ] by SMART
  • Alignments of the sequence of 4FXV with the sequences similar proteins can be viewed for 4FXV's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4FXV
  • Community annotation for 4FXV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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