4FZ5 Immune System date Jul 06, 2012
title Crystal Structure Of Human Tirap Tir-Domain
authors J.R.Woo, S.Kim, S.E.Shoelson, S.Park
compound source
Molecule: Tollinterleukin-1 Receptor Domain-Containing Ada Protein;
Chain: A, B
Fragment: Tir Domain, Unp Residues 72-221
Synonym: Tir Domain-Containing Adapter Protein, Adaptor Pro Wyatt, Myd88 Adapter-Like Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tirap, Mal
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 2 2
R_factor 0.324 R_Free 0.346
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.253 100.253 78.939 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4fz5.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (4fz5.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (4fz5.pdb3.gz) 19 Kb
  • CSU: Contacts of Structural Units for 4FZ5
  • Structure Factors (54 Kb)
  • Retrieve 4FZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FZ5 from S2C, [Save to disk]
  • Re-refined 4fz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FZ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FZ5, from MSDmotif at EBI
  • Fold representative 4fz5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fz5_A] [4fz5] [4fz5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FZ5
  • Community annotation for 4FZ5 at PDBWiki (http://pdbwiki.org)

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