4FZY Exonuclease X in complex with 12bp blunt-ended dsDNA date 2012-07-08
authors Wang, T., Sun, H., Cheng, F., Bi, L., Jiang, T.
compound source
symmetry
R_factor
R_Free 0.24076
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRecognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease., Wang T, Sun HL, Cheng F, Zhang XE, Bi L, Jiang T, Nucleic Acids Res. 2013 Jun 14. PMID:23771145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4fzy.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4FZY
  • CSU: Contacts of Structural Units for 4FZY
  • Structure Factors (336 Kb)
  • Retrieve 4FZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FZY from S2C, [Save to disk]
  • Re-refined 4fzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FZY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FZY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fzy] [4fzy_C] [4fzy_D] [4fzy_A] [4fzy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FZY: [EXOIII ] by SMART
    • Other resources with information on 4FZY
  • Community annotation for 4FZY at PDBWiki (http://pdbwiki.org)

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