4G1E Protein Binding date Jul 10, 2012
title Crystal Structure Of Integrin Alpha V Beta 3 With Coil-Coile
authors X.Dong, L.Mi, J.Zhu, W.Wang, B.Luo, T.A.Springer
compound source
Molecule: Integrin Alpha-V
Chain: A
Fragment: Unp Residues 31-989
Synonym: Vitronectin Receptor Subunit Alpha, Integrin Alpha Chain, Integrin Alpha-V Light Chain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgav, Msk8, Vnra

Molecule: Integrin Beta-3
Chain: B
Fragment: Unp Residues 27-717
Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb3, Gp3a
symmetry Space Group: P 32 2 1
R_factor 0.241 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.558 128.558 352.859 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand BMA, CA, CL, MAN, NAG, NI, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of cytos...

  • B
  • smooth muscle cell migration...

  • Primary referencealpha(V)beta(3) Integrin Crystal Structures and Their Functional Implications., Dong X, Mi LZ, Zhu J, Wang W, Hu P, Luo BH, Springer TA, Biochemistry. 2012 Nov 6;51(44):8814-28. doi: 10.1021/bi300734n. Epub 2012 Oct, 29. PMID:23106217
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (602 Kb) [Save to disk]
  • Biological Unit Coordinates (4g1e.pdb1.gz) 586 Kb
  • Biological Unit Coordinates (4g1e.pdb2.gz) 491 Kb
  • Biological Unit Coordinates (4g1e.pdb3.gz) 1162 Kb
  • LPC: Ligand-Protein Contacts for 4G1E
  • CSU: Contacts of Structural Units for 4G1E
  • Structure Factors (631 Kb)
  • Retrieve 4G1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G1E from S2C, [Save to disk]
  • Re-refined 4g1e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G1E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4G1E, from MSDmotif at EBI
  • Fold representative 4g1e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g1e_A] [4g1e_B] [4g1e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G1E: [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART
  • Other resources with information on 4G1E
  • Community annotation for 4G1E at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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