OCA Atlas for 4G1F

4G1F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

0WG, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, B, A	virus receptor activity chemorepellent activity

Primary reference

Structure-based design of pyridopyrimidinediones as dipeptidyl peptidase IV inhibitors., Lam B, Zhang Z, Stafford JA, Skene RJ, Shi L, Gwaltney SL 2nd, Bioorg Med Chem Lett. 2012 Nov 1;22(21):6628-31. doi: 10.1016/j.bmcl.2012.08.110., Epub 2012 Sep 7. PMID:23025999

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (982 Kb) [Save to disk]

Biological Unit Coordinates (4g1f.pdb1.gz) 249 Kb

Biological Unit Coordinates (4g1f.pdb2.gz) 248 Kb

Biological Unit Coordinates (4g1f.pdb3.gz) 249 Kb

Biological Unit Coordinates (4g1f.pdb4.gz) 249 Kb

Biological Unit Coordinates (4g1f.pdb5.gz) 489 Kb

Biological Unit Coordinates (4g1f.pdb6.gz) 491 Kb

Biological Unit Coordinates (4g1f.pdb7.gz) 973 Kb

LPC: Ligand-Protein Contacts for 4G1F

CSU: Contacts of Structural Units for 4G1F

Structure Factors (1269 Kb)

Retrieve 4G1F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4G1F from S2C, [Save to disk]

Re-refined 4g1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4G1F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4g1f] [4g1f_A] [4g1f_B] [4g1f_C] [4g1f_D]

SWISS-PROT database:

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