4G2V Structure complex of LGN binding with FRMPD1 date
authors Shang, Y., Pan, Z., Wen, W., Wang, W., Zhang, M.
compound source
symmetry
R_factor
R_Free 0.2321
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand BTB, CL, GOL enzyme
Primary referenceStructural and biochemical characterization of the interaction between LGN and Frmpd1., Pan Z, Shang Y, Jia M, Zhang L, Xia C, Zhang M, Wang W, Wen W, J Mol Biol. 2013 Mar 25;425(6):1039-49. doi: 10.1016/j.jmb.2013.01.003. Epub 2013, Jan 11. PMID:23318951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4g2v.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 4G2V
  • CSU: Contacts of Structural Units for 4G2V
  • Structure Factors (356 Kb)
  • Retrieve 4G2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G2V from S2C, [Save to disk]
  • Re-refined 4g2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G2V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G2V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g2v_B] [4g2v] [4g2v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G2V: [TPR ] by SMART
    • Other resources with information on 4G2V
  • Community annotation for 4G2V at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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