4G3D Crystal structure of human NF-kappaB inducing kinase (NIK) date
authors Hymowitz, S.G., Leon-Boenig, G.de.
compound source
symmetry
R_factor
R_Free 0.26646
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


Primary referenceThe crystal structure of the catalytic domain of the NF-kappaB inducing kinase reveals a narrow but flexible active site., de Leon-Boenig G, Bowman KK, Feng JA, Crawford T, Everett C, Franke Y, Oh A, Stanley M, Staben ST, Starovasnik MA, Wallweber HJ, Wu J, Wu LC, Johnson AR, Hymowitz SG, Structure. 2012 Oct 10;20(10):1704-14. doi: 10.1016/j.str.2012.07.013. Epub 2012 , Aug 23. PMID:22921830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (4g3d.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (4g3d.pdb2.gz) 103 Kb
  • Biological Unit Coordinates (4g3d.pdb3.gz) 97 Kb
  • Biological Unit Coordinates (4g3d.pdb4.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 4G3D
  • CSU: Contacts of Structural Units for 4G3D
  • Structure Factors (502 Kb)
  • Retrieve 4G3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G3D from S2C, [Save to disk]
  • Re-refined 4g3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G3D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G3D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g3d_A] [4g3d_B] [4g3d_E] [4g3d] [4g3d_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G3D: [STYKc ] by SMART
  • Other resources with information on 4G3D
  • Community annotation for 4G3D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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