4G3I Transferase Dna date Jul 14, 2012
title Crystal Structure Of Dpo4 In Complex With Dna Duplex
authors Y.Y.Yan, J.H.Gan, Z.Huang
compound source
Molecule: Dna
Chain: C, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna
Chain: D, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Polymerase Iv
Chain: A, B
Synonym: Pol Iv
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 273057
Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2
Gene: Dbh, Dpo4, Sso2448
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 1
R_factor 0.241 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.472 52.634 99.445 75.40 80.35 70.97
method X-Ray Diffractionresolution 2.50 Å
ligand CA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (4g3i.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (4g3i.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4G3I
  • CSU: Contacts of Structural Units for 4G3I
  • Structure Factors (723 Kb)
  • Retrieve 4G3I in mmCIF format [Save to disk]
  • Re-refined 4g3i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G3I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4G3I, from MSDmotif at EBI
  • Fold representative 4g3i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g3i_B] [4g3i_F] [4g3i] [4g3i_D] [4g3i_E] [4g3i_C] [4g3i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4G3I
  • Community annotation for 4G3I at PDBWiki (http://pdbwiki.org)

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