4G3Y Crystal structure of TNF-alpha in complex with Infliximab Fab fragment date 2012-07-15
authors Liang, S.Y., Dai, J.X., Guo, Y.J., Lou, Z.Y.
compound source
symmetry
R_factor
R_Free 0.2348
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceStructural basis for treating tumor necrosis factor alpha (TNFalpha)-associated diseases with the therapeutic antibody infliximab., Liang S, Dai J, Hou S, Su L, Zhang D, Guo H, Hu S, Wang H, Rao Z, Guo Y, Lou Z, J Biol Chem. 2013 May 10;288(19):13799-807. doi: 10.1074/jbc.M112.433961. Epub, 2013 Mar 15. PMID:23504311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4g3y.pdb1.gz) 277 Kb
  • Biological Unit Coordinates (4g3y.pdb2.gz) 94 Kb
  • CSU: Contacts of Structural Units for 4G3Y
  • Structure Factors (347 Kb)
  • Retrieve 4G3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G3Y from S2C, [Save to disk]
  • Re-refined 4g3y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G3Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G3Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g3y_H] [4g3y_C] [4g3y_L] [4g3y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G3Y: [IG_like] [IGv] [TNF ] by SMART
  • Other resources with information on 4G3Y
  • Community annotation for 4G3Y at PDBWiki (http://pdbwiki.org)

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