4G54 Crystal structure of a periplasmic domain of the EpsAB fusion protein of the Vibrio vulnificus type II secretion system date
authors Martynnowski, D., Grochulski, P., Howard, S.P.
compound source
symmetry
R_factor
R_Free 0.20223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
Primary referenceStructure of a periplasmic domain of the EpsAB fusion protein of the Vibrio vulnificus type II secretion system., Martynowski D, Grochulski P, Howard PS, Acta Crystallogr D Biol Crystallogr. 2013 Feb;69(Pt 2):142-9. doi:, 10.1107/S0907444912042710. Epub 2013 Jan 16. PMID:23385451
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4g54.pdb1.gz) 80 Kb
  • CSU: Contacts of Structural Units for 4G54
  • Structure Factors (540 Kb)
  • Retrieve 4G54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G54 from S2C, [Save to disk]
  • Re-refined 4g54 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G54
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G54, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g54_A] [4g54]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4G54
  • Community annotation for 4G54 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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