4G55 Endocytosis date Jul 17, 2012
title Clathrin Terminal Domain Complexed With Pitstop 2
authors H.Bulut, L.Von Kleist, W.Saenger, V.Haucke
compound source
Molecule: Clathrin Heavy Chain 1
Chain: A
Fragment: N-Terminal Domain
Synonym: Clathrin Heavy Chain On Chromosome 17, Clh-17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clh17, Cltc, Cltcl2, Kiaa0034
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.899 74.019 82.118 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand ACT, DMS, EDO, PEG, VH2 enzyme
note 4G55 supersedes 2XZH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRole of the clathrin terminal domain in regulating coated pit dynamics revealed by small molecule inhibition., von Kleist L, Stahlschmidt W, Bulut H, Gromova K, Puchkov D, Robertson MJ, Macgregor KA, Tomlin N, Pechstein A, Chau N, Chircop M, Sakoff J, von Kries JP, Saenger W, Krausslich HG, Shupliakov O, Robinson PJ, McCluskey A, Haucke V, Cell. 2011 Aug 5;146(3):471-84. PMID:21816279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4g55.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4G55
  • CSU: Contacts of Structural Units for 4G55
  • Structure Factors (362 Kb)
  • Retrieve 4G55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G55 from S2C, [Save to disk]
  • Re-refined 4g55 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G55
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4G55, from MSDmotif at EBI
  • Fold representative 4g55 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g55] [4g55_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4G55
  • Community annotation for 4G55 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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