4G7Z Crystal structure of Thermus thermophilus transcription initiation complex containing 5-BrU at template-strand position +1 date 2012-07-20
authors Zhang, Y., Ebright, R.H.
compound source
symmetry
R_factor
R_Free 0.2322
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.81
ligand BRU, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, K, B, L


F, P
  • bacterial sigma factor activ...


    • M, C


    N, D


    O, E


    Primary referenceStructural Basis of Transcription Initiation., Zhang Y, Feng Y, Chatterjee S, Tuske S, Ho MX, Arnold E, Ebright RH, Science. 2012 Oct 18. PMID:23086998
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1144 Kb) [Save to disk]
  • Biological Unit Coordinates (4g7z.pdb1.gz) 575 Kb
  • Biological Unit Coordinates (4g7z.pdb2.gz) 575 Kb
  • LPC: Ligand-Protein Contacts for 4G7Z
  • CSU: Contacts of Structural Units for 4G7Z
  • Structure Factors (549 Kb)
  • Retrieve 4G7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G7Z from S2C, [Save to disk]
  • Re-refined 4g7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G7Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G7Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g7z_A] [4g7z_Q] [4g7z_M] [4g7z_B] [4g7z_K] [4g7z_N] [4g7z_L] [4g7z_E] [4g7z_C] [4g7z_F] [4g7z_D] [4g7z_G] [4g7z] [4g7z_R] [4g7z_O] [4g7z_H] [4g7z_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G7Z: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
    • Other resources with information on 4G7Z
  • Community annotation for 4G7Z at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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