4G88 Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii date
authors Lee, W.C., Song, J.H., Park, J.S., Kim, H.Y.
compound source
symmetry
R_factor
R_Free 0.2338
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand API, SRT enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (4g88.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (4g88.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (4g88.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (4g88.pdb4.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4G88
  • CSU: Contacts of Structural Units for 4G88
  • Structure Factors (2516 Kb)
  • Retrieve 4G88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G88 from S2C, [Save to disk]
  • Re-refined 4g88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G88, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g88_E] [4g88] [4g88_B] [4g88_C] [4g88_F] [4g88_G] [4g88_H] [4g88_A] [4g88_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G88
  • Community annotation for 4G88 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science