4G92 Transcription Dna date Jul 23, 2012
title Ccaat-Binding Complex From Aspergillus Nidulans With Dna
authors E.M.Huber, D.H.Scharf, P.Hortschansky, M.Groll, A.A.Brakhage
compound source
Molecule: Hapb Protein
Chain: A
Fragment: Unp Residues 231-293
Engineered: Yes
Organism_scientific: Emericella Nidulans
Organism_taxid: 162425
Gene: Hapb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Hapc (Eurofung)
Chain: B
Fragment: Unp Residues 42-132
Engineered: Yes

Organism_scientific: Aspergillus Nidulans
Organism_taxid: 227321
Strain: Fgsc A4 Atcc 38163 Cbs 112.46 Nrrl 194 M139
Gene: An4034.2, Ania_04034
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hape
Chain: C
Fragment: Unp Residues 47-164
Engineered: Yes

Organism_scientific: Aspergillus Nidulans
Organism_taxid: 227321
Strain: Fgsc A4 Atcc 38163 Cbs 112.46 Nrrl 194 M139
Gene: An6492.2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Dna
Chain: E
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.040 72.890 145.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme
Gene ANIA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceDNA Minor Groove Sensing and Widening by the CCAAT-Binding Complex., Huber EM, Scharf DH, Hortschansky P, Groll M, Brakhage AA, Structure. 2012 Oct 10;20(10):1757-68. doi: 10.1016/j.str.2012.07.012. Epub 2012 , Aug 16. PMID:22902862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (4g92.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4G92
  • CSU: Contacts of Structural Units for 4G92
  • Structure Factors (745 Kb)
  • Retrieve 4G92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G92 from S2C, [Save to disk]
  • Re-refined 4g92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G92
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4G92, from MSDmotif at EBI
  • Fold representative 4g92 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g92_D] [4g92_C] [4g92_A] [4g92] [4g92_B] [4g92_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G92: [CBF ] by SMART
  • Other resources with information on 4G92
  • Community annotation for 4G92 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science