4GAP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	FAD, NAD	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structure of the yeast NADH dehydrogenase (Ndi1) reveals overlapping binding sites for water- and lipid-soluble substrates., Iwata M, Lee Y, Yamashita T, Yagi T, Iwata S, Cameron AD, Maher MJ, Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15247-52. Epub 2012 Sep 4. PMID:22949654

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (314 Kb) [Save to disk] Biological Unit Coordinates (4gap.pdb1.gz) 308 Kb LPC: Ligand-Protein Contacts for 4GAP CSU: Contacts of Structural Units for 4GAP Structure Factors (235 Kb) Retrieve 4GAP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GAP from S2C, [Save to disk] Re-refined 4gap structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GAP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gap] [4gap_A] [4gap_B] SWISS-PROT database:

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