4GAZ Crystal Structure of a Jumonji Domain-containing Protein JMJD5 date 2012-07-26
authors Wang, H., Zhou, X., Zhang, X., Tao, Y., Chen, N., Zang, J.
compound source
symmetry
R_factor
R_Free 0.2742
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.81
ligand NI, OGA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4gaz.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (4gaz.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4GAZ
  • CSU: Contacts of Structural Units for 4GAZ
  • Structure Factors (219 Kb)
  • Retrieve 4GAZ in mmCIF format [Save to disk]
  • Re-refined 4gaz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GAZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GAZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gaz] [4gaz_B] [4gaz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GAZ: [JmjC ] by SMART
    • Other resources with information on 4GAZ
  • Community annotation for 4GAZ at PDBWiki (http://pdbwiki.org)

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