4GBM Sulfotransferase Domain from the Curacin Biosynthetic Pathway date 2012-07-27
authors McCarthy, J.G., Smith, J.L.
compound source
symmetry
R_factor
R_Free 0.1820
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.62
ligand A3P, CL, P6G, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of Functional Group Activation by Sulfotransferases in Complex Metabolic Pathways., McCarthy JG, Eisman EB, Kulkarni S, Gerwick L, Gerwick WH, Wipf P, Sherman DH, Smith JL, ACS Chem Biol. 2012 Sep 26. PMID:22991895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (4gbm.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 4GBM
  • CSU: Contacts of Structural Units for 4GBM
  • Structure Factors (584 Kb)
  • Retrieve 4GBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GBM from S2C, [Save to disk]
  • Re-refined 4gbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GBM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GBM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gbm] [4gbm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GBM
  • Community annotation for 4GBM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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