4GCR Eye Lens Protein date Apr 02, 1992
title Structure Of The Bovine Eye Lens Protein Gamma-B (Gamma-II)- Crystallin At 1.47 Angstroms
authors C.Slingsby, S.Najmudin, V.Nalini, H.P.C.Driessen, T.L.Blundell, D.S.Moss, P.Lindley
compound source
Molecule: Gamma-B Crystallin
Chain: A
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 41 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.530 57.530 97.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.47 Å
note 4GCR (Molecule of the Month:pdb127)supersedes 1GCR
related structures by homologous chain: 1DSL, 1HK0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the bovine eye lens protein gammaB(gammaII)-crystallin at 1.47 A., Najmudin S, Nalini V, Driessen HP, Slingsby C, Blundell TL, Moss DS, Lindley PF, Acta Crystallogr D Biol Crystallogr. 1993 Mar 1;49(Pt 2):223-33. PMID:15299528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (4gcr.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 4GCR
  • Likely Quarternary Molecular Structure file(s) for 4GCR
  • Structure Factors (257 Kb)
  • Retrieve 4GCR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GCR from S2C, [Save to disk]
  • Re-refined 4gcr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GCR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GCR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 4GCR from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GCR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4gcr_1, region 1-85 [Jmol] [rasmolscript] [script source]
        - Domain d4gcr_2, region 86-174 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gcr] [4gcr_A]
  • SWISS-PROT database: [P02526]
  • Domain organization of [CRGB_BOVIN] by SWISSPFAM
  • Domain found in 4GCR: [XTALbg ] by SMART
    • Other resources with information on 4GCR
  • Community annotation for 4GCR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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