4GDL Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of Atg16L1 date
authors Otomo, C., Metlagel, Z., Takaesu, G., Otomo, T.
compound source
symmetry
R_factor
R_Free 0.2540
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.88
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy., Otomo C, Metlagel Z, Takaesu G, Otomo T, Nat Struct Mol Biol. 2012 Dec 2. doi: 10.1038/nsmb.2431. PMID:23202584
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (4gdl.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4GDL
  • CSU: Contacts of Structural Units for 4GDL
  • Structure Factors (67 Kb)
  • Retrieve 4GDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GDL from S2C, [Save to disk]
  • Re-refined 4gdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GDL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GDL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gdl_C] [4gdl_A] [4gdl] [4gdl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GDL
  • Community annotation for 4GDL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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