4GEJ	Protein Binding	date	Aug 02, 2012
title	N-Terminal Domain Of Vdup-1
authors	G.Polekhina, S.F.Kok, D.B.Ascher, M.Waltham
compound		source
Molecule: Thioredoxin-Interacting Protein Chain: A, B, C, D, E, F, G, H, I, J Fragment: N-Terminal Domain, Unp Residues 2-149 Synonym: Thioredoxin-Binding Protein 2, Vitamin D3 Up-Regul Protein 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Txnip, Vdup1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Ec538 Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pmcsg7
symmetry	Space Group: P 1 21 1	R_factor 0.212 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.740 178.810 81.890 90.00 113.32 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CA	enzyme
Primary reference	Structure of the N-terminal domain of human thioredoxin-interacting protein., Polekhina G, Ascher DB, Kok SF, Beckham S, Wilce M, Waltham M, Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):333-44. doi:, 10.1107/S0907444912047099. Epub 2013 Feb 16. PMID:23519408

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (479 Kb) [Save to disk] Biological Unit Coordinates (4gej.pdb1.gz) 49 Kb Biological Unit Coordinates (4gej.pdb2.gz) 48 Kb Biological Unit Coordinates (4gej.pdb3.gz) 49 Kb Biological Unit Coordinates (4gej.pdb4.gz) 48 Kb Biological Unit Coordinates (4gej.pdb5.gz) 50 Kb Biological Unit Coordinates (4gej.pdb6.gz) 50 Kb Biological Unit Coordinates (4gej.pdb7.gz) 49 Kb Biological Unit Coordinates (4gej.pdb8.gz) 50 Kb Biological Unit Coordinates (4gej.pdb9.gz) 51 Kb LPC: Ligand-Protein Contacts for 4GEJ CSU: Contacts of Structural Units for 4GEJ Structure Factors (632 Kb) Retrieve 4GEJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GEJ from S2C, [Save to disk] Re-refined 4gej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GEJ in 3D

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Visual 3D analysis of 4GEJ

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4GEJ, from MSDmotif at EBI Fold representative 4gej from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gej] [4gej_G] [4gej_C] [4gej_D] [4gej_J] [4gej_E] [4gej_F] [4gej_A] [4gej_B] [4gej_H] [4gej_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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