4GGA Structural Analysis of Human Cdc20 Supports Multi-site Degron Recognition by APC/C date
authors Luo, X., Tian, W., Tomchick, D.R.
compound source
symmetry
R_factor
R_Free 0.2030
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.04
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of human Cdc20 supports multisite degron recognition by APC/C., Tian W, Li B, Warrington R, Tomchick DR, Yu H, Luo X, Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18419-24. doi:, 10.1073/pnas.1213438109. Epub 2012 Oct 22. PMID:23091007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (4gga.pdb1.gz) 146 Kb
  • CSU: Contacts of Structural Units for 4GGA
  • Structure Factors (146 Kb)
  • Retrieve 4GGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GGA from S2C, [Save to disk]
  • Re-refined 4gga structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GGA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GGA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gga] [4gga_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GGA: [WD40 ] by SMART
  • Other resources with information on 4GGA
  • Community annotation for 4GGA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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