4GID Structure of beta-secretase complexed with inhibitor date 2012-08-08
authors Ghosh, A., Tang, J., Venkateswara, R.K., Yadav, N., Anderson, D., Gavande, N., Huang, X., Terzyan, S.
compound source
symmetry
R_factor
R_Free 0.2519
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 0GH, LPD BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure-Based Design of Highly Selective beta-Secretase Inhibitors: Synthesis, Biological Evaluation, and Protein-Ligand X-ray Crystal Structure., Ghosh AK, Venkateswara Rao K, Yadav ND, Anderson DD, Gavande N, Huang X, Terzyan S, Tang J, J Med Chem. 2012 Sep 6. PMID:22954357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (4gid.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (4gid.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (4gid.pdb3.gz) 72 Kb
  • Biological Unit Coordinates (4gid.pdb4.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4GID
  • CSU: Contacts of Structural Units for 4GID
  • Structure Factors (1030 Kb)
  • Retrieve 4GID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GID from S2C, [Save to disk]
  • Re-refined 4gid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GID
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GID, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gid_B] [4gid_D] [4gid] [4gid_C] [4gid_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GID
  • Community annotation for 4GID at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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