4GIF C-terminal coiled-coil domain of transient receptor potential channel TRPP3 (PKD2L1, Polycystin-L) date 2012-08-08
authors Yu, Y., Ulbrich, M.H., Li, M.H., Dobbins, S., Zhang, W.K., Tong, L., Isacoff, E.Y., Yang, J.
compound source
symmetry
R_factor
R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
Primary referenceMolecular mechanism of the assembly of an acid-sensing receptor ion channel complex., Yu Y, Ulbrich MH, Li MH, Dobbins S, Zhang WK, Tong L, Isacoff EY, Yang J, Nat Commun. 2012 Dec 4;3:1252. doi: 10.1038/ncomms2257. PMID:23212381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (4gif.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 4GIF
  • Structure Factors (16 Kb)
  • Retrieve 4GIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GIF from S2C, [Save to disk]
  • Re-refined 4gif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GIF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GIF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gif_A] [4gif]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GIF
  • Community annotation for 4GIF at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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