4GII Tyk2 (JH1) in complex with 2,6-dichloro-4-cyano-N-{2-[(cyclopropylcarbonyl)amino]pyridin-4-yl}benzamide date 2012-08-08
authors Ultsch, M.H.
compound source
symmetry
R_factor
R_Free 0.2521
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.31
ligand 0X6 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLead Optimization of a 4-Aminopyridine Benzamide Scaffold To Identify Potent, Selective, and Orally Bioavailable TYK2 Inhibitors., Liang J, van Abbema A, Balazs M, Barrett K, Berezhkovsky L, Blair W, Chang C, Delarosa D, Devoss J, Driscoll J, Eigenbrot C, Ghilardi N, Gibbons P, Halladay J, Johnson A, Kohli PB, Lai Y, Liu Y, Lyssikatos J, Mantik P, Menghrajani K, Murray J, Peng I, Sambrone A, Shia S, Shin Y, Smith J, Sohn S, Tsui V, Ultsch M, Wu LC, Xiao Y, Yang W, Young J, Zhang B, Zhu BY, Magnuson S, J Med Chem. 2013 Jun 13;56(11):4521-36. doi: 10.1021/jm400266t. Epub 2013 May 29. PMID:23668484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (4gii.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4GII
  • CSU: Contacts of Structural Units for 4GII
  • Structure Factors (191 Kb)
  • Retrieve 4GII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GII from S2C, [Save to disk]
  • Re-refined 4gii structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GII
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GII, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gii_A] [4gii]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GII: [TyrKc ] by SMART
  • Other resources with information on 4GII
  • Community annotation for 4GII at PDBWiki (http://pdbwiki.org)

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