4GK2 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand L66 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimization of Inhibitors of the Tyrosine Kinase EphB4. 2. Cellular Potency Improvement and Binding Mode Validation by X-ray Crystallography., Lafleur K, Dong J, Huang D, Caflisch A, Nevado C, J Med Chem. 2013 Jan 10;56(1):84-96. doi: 10.1021/jm301187e. Epub 2012 Dec 19. PMID:23253074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4gk2.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4GK2
  • CSU: Contacts of Structural Units for 4GK2
  • Structure Factors (311 Kb)
  • Retrieve 4GK2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GK2 from S2C, [Save to disk]
  • Re-refined 4gk2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GK2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gk2] [4gk2_A]
  • SWISS-PROT database:
  • Domain found in 4GK2: [TyrKc ] by SMART

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