4GLR Structure of the anti-ptau Fab (pT231/pS235_1) in complex with phosphoepitope pT231/pS235 date
authors Tu, C., Mosyak, L., Bard, J.
compound source
symmetry
R_factor
R_Free 0.2081
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand PO4, TPO enzyme
Primary referenceAn Ultra-specific Avian Antibody to Phosphorylated Tau Protein Reveals a Unique Mechanism for Phosphoepitope Recognition., Shih HH, Tu C, Cao W, Klein A, Ramsey R, Fennell BJ, Lambert M, Ni Shuilleabhain D, Autin B, Kouranova E, Laxmanan S, Braithwaite S, Wu L, Ait-Zahra M, Milici AJ, Dumin JA, Lavallie ER, Arai M, Corcoran C, Paulsen JE, Gill D, Cunningham O, Bard J, Mosyak L, Finlay WJ, J Biol Chem. 2012 Dec 28;287(53):44425-34. doi: 10.1074/jbc.M112.415935. Epub, 2012 Nov 12. PMID:23148212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk]
  • Biological Unit Coordinates (4glr.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (4glr.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 4GLR
  • CSU: Contacts of Structural Units for 4GLR
  • Structure Factors (1514 Kb)
  • Retrieve 4GLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GLR from S2C, [Save to disk]
  • Re-refined 4glr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GLR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GLR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4glr_I] [4glr] [4glr_A] [4glr_K] [4glr_B] [4glr_H] [4glr_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GLR: [IG_like] [IGv ] by SMART
    • Other resources with information on 4GLR
  • Community annotation for 4GLR at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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