4GNK Crystal structure of Galphaq in complex with full-length human PLCbeta3 date 2012-08-17
authors Lyon, A.M., Tesmer, J.J.G.
compound source
symmetry
R_factor
R_Free 0.25468
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.00
ligand ALF, CA, GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • GTPase activator activity


  • D, B


    E


    Primary referenceFull-length Galpha(q)-phospholipase C-beta3 structure reveals interfaces of the C-terminal coiled-coil domain., Lyon AM, Dutta S, Boguth CA, Skiniotis G, Tesmer JJ, Nat Struct Mol Biol. 2013 Mar;20(3):355-62. doi: 10.1038/nsmb.2497. Epub 2013 Feb, 3. PMID:23377541
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (845 Kb) [Save to disk]
  • Biological Unit Coordinates (4gnk.pdb1.gz) 382 Kb
  • Biological Unit Coordinates (4gnk.pdb2.gz) 376 Kb
  • Biological Unit Coordinates (4gnk.pdb3.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4GNK
  • CSU: Contacts of Structural Units for 4GNK
  • Structure Factors (581 Kb)
  • Retrieve 4GNK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GNK from S2C, [Save to disk]
  • Re-refined 4gnk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GNK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GNK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GNK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gnk_D] [4gnk_E] [4gnk] [4gnk_B] [4gnk_A] [4gnk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GNK: [C2] [G_alpha] [PLCXc] [PLCYc ] by SMART
  • Other resources with information on 4GNK
  • Community annotation for 4GNK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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