4GNZ Crystal structure of the c707s mutant of c-terminal domain of 10'formyltetrahydrofolate dehydrogenase in complex with NADP date 2012-08-17
authors Tsybovsky, Y.
compound source
symmetry
R_factor
R_Free 0.20979
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand GOL, NAP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe mechanism of discrimination between oxidized and reduced coenzyme in the aldehyde dehydrogenase domain of Aldh1l1., Tsybovsky Y, Malakhau Y, Strickland KC, Krupenko SA, Chem Biol Interact. 2013 Jan 5. pii: S0009-2797(12)00285-2. doi:, 10.1016/j.cbi.2012.12.015. PMID:23295222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (4gnz.pdb1.gz) 334 Kb
  • LPC: Ligand-Protein Contacts for 4GNZ
  • CSU: Contacts of Structural Units for 4GNZ
  • Structure Factors (2638 Kb)
  • Retrieve 4GNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GNZ from S2C, [Save to disk]
  • Re-refined 4gnz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GNZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GNZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gnz_A] [4gnz_C] [4gnz_B] [4gnz] [4gnz_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GNZ
  • Community annotation for 4GNZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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