4GPI Crystal structure of human B type phosphoglycerate mutase date 2012-08-21
authors Zhou, L., He, C.
compound source
symmetry
R_factor
R_Free 0.2325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.08
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, B


Primary referenceTyr26 phosphorylation of PGAM1 provides a metabolic advantage to tumours by stabilizing the active conformation., Hitosugi T, Zhou L, Fan J, Elf S, Zhang L, Xie J, Wang Y, Gu TL, Aleckovic M, Leroy G, Kang Y, Kang HB, Seo JH, Shan C, Jin P, Gong W, Lonial S, Arellano ML, Khoury HJ, Chen GZ, Shin DM, Khuri FR, Boggon TJ, Kang S, He C, Chen J, Nat Commun. 2013;4:1790. doi: 10.1038/ncomms2759. PMID:23653202
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4gpi.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4GPI
  • CSU: Contacts of Structural Units for 4GPI
  • Structure Factors (1222 Kb)
  • Retrieve 4GPI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GPI from S2C, [Save to disk]
  • Re-refined 4gpi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GPI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GPI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GPI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gpi_B] [4gpi_C] [4gpi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GPI: [PGAM ] by SMART
    • Other resources with information on 4GPI
  • Community annotation for 4GPI at PDBWiki (http://pdbwiki.org)

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